NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,681.6 |
| Mean read quality |
12.6 |
| Median read length |
1,900.0 |
| Median read quality |
13.7 |
| Number of reads |
445,527.0 |
| Read length N50 |
4,250.0 |
| STDEV read length |
2,528.7 |
| Total bases |
1,194,707,442.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
445521 (100.0%) 1194.7Mb |
| >Q7 |
445485 (100.0%) 1194.7Mb |
| >Q10 |
427030 (95.8%) 1146.7Mb |
| >Q12 |
343348 (77.1%) 929.5Mb |
| >Q15 |
114247 (25.6%) 286.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.6 (21) |
| 2 |
28.0 (10) |
| 3 |
27.4 (183) |
| 4 |
27.2 (10) |
| 5 |
26.4 (138) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36994 (14.1) |
| 2 |
36817 (14.5) |
| 3 |
36460 (14.5) |
| 4 |
36107 (10.8) |
| 5 |
35747 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot