NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,260.2 |
| Mean read quality |
12.6 |
| Median read length |
2,578.0 |
| Median read quality |
13.7 |
| Number of reads |
118,350.0 |
| Read length N50 |
7,572.0 |
| STDEV read length |
5,125.9 |
| Total bases |
504,195,246.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
118344 (100.0%) 504.2Mb |
| >Q7 |
118307 (100.0%) 504.2Mb |
| >Q10 |
113503 (95.9%) 484.6Mb |
| >Q12 |
91682 (77.5%) 393.0Mb |
| >Q15 |
29110 (24.6%) 110.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (10) |
| 2 |
28.6 (10) |
| 3 |
28.0 (10) |
| 4 |
26.7 (10) |
| 5 |
24.7 (179) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91144 (10.7) |
| 2 |
74995 (11.9) |
| 3 |
74798 (9.4) |
| 4 |
70823 (16.0) |
| 5 |
65786 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot