NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,968.6 |
| Mean read quality |
12.6 |
| Median read length |
2,378.0 |
| Median read quality |
13.7 |
| Number of reads |
185,922.0 |
| Read length N50 |
7,059.0 |
| STDEV read length |
4,876.6 |
| Total bases |
737,859,128.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
185920 (100.0%) 737.9Mb |
| >Q7 |
185872 (100.0%) 737.9Mb |
| >Q10 |
178003 (95.7%) 708.3Mb |
| >Q12 |
142599 (76.7%) 572.2Mb |
| >Q15 |
44923 (24.2%) 161.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.2 (10) |
| 2 |
26.9 (13) |
| 3 |
25.3 (53) |
| 4 |
24.1 (53) |
| 5 |
24.0 (110) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
115803 (9.8) |
| 2 |
89177 (9.9) |
| 3 |
73038 (11.0) |
| 4 |
69460 (12.2) |
| 5 |
66196 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot