NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,112.5 |
| Mean read quality |
12.6 |
| Median read length |
2,421.0 |
| Median read quality |
13.7 |
| Number of reads |
151,152.0 |
| Read length N50 |
7,494.0 |
| STDEV read length |
5,086.6 |
| Total bases |
621,617,019.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
151143 (100.0%) 621.6Mb |
| >Q7 |
151066 (99.9%) 621.6Mb |
| >Q10 |
144864 (95.8%) 598.1Mb |
| >Q12 |
116660 (77.2%) 488.6Mb |
| >Q15 |
37943 (25.1%) 144.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (10) |
| 2 |
28.6 (10) |
| 3 |
28.5 (16) |
| 4 |
28.5 (10) |
| 5 |
26.3 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
105778 (12.5) |
| 2 |
78498 (11.3) |
| 3 |
74459 (10.3) |
| 4 |
63864 (13.5) |
| 5 |
63811 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot