NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,175.1 |
| Mean read quality |
12.2 |
| Median read length |
1,905.0 |
| Median read quality |
13.2 |
| Number of reads |
320,896.0 |
| Read length N50 |
5,734.0 |
| STDEV read length |
3,814.7 |
| Total bases |
1,018,868,116.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
320895 (100.0%) 1018.9Mb |
| >Q7 |
320881 (100.0%) 1018.9Mb |
| >Q10 |
302581 (94.3%) 959.0Mb |
| >Q12 |
224775 (70.0%) 711.2Mb |
| >Q15 |
54594 (17.0%) 143.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.0 (58) |
| 2 |
26.0 (89) |
| 3 |
25.7 (78) |
| 4 |
25.6 (70) |
| 5 |
25.4 (52) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91130 (15.2) |
| 2 |
73123 (13.2) |
| 3 |
67619 (11.3) |
| 4 |
62373 (12.7) |
| 5 |
61569 (15.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot