NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,580.7 |
| Mean read quality |
12.1 |
| Median read length |
2,205.0 |
| Median read quality |
13.1 |
| Number of reads |
364,948.0 |
| Read length N50 |
6,376.0 |
| STDEV read length |
4,268.3 |
| Total bases |
1,306,758,436.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
364938 (100.0%) 1306.8Mb |
| >Q7 |
364881 (100.0%) 1306.8Mb |
| >Q10 |
343141 (94.0%) 1228.8Mb |
| >Q12 |
253879 (69.6%) 912.4Mb |
| >Q15 |
59458 (16.3%) 175.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.1 (49) |
| 2 |
27.8 (49) |
| 3 |
26.9 (10) |
| 4 |
25.6 (238) |
| 5 |
25.4 (33) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
88238 (13.3) |
| 2 |
88088 (10.5) |
| 3 |
85229 (14.2) |
| 4 |
84897 (15.2) |
| 5 |
81395 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot