NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,560.3 |
| Mean read quality |
12.2 |
| Median read length |
2,121.0 |
| Median read quality |
13.2 |
| Number of reads |
260,103.0 |
| Read length N50 |
6,520.0 |
| STDEV read length |
4,393.7 |
| Total bases |
926,042,297.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
260102 (100.0%) 926.0Mb |
| >Q7 |
260088 (100.0%) 926.0Mb |
| >Q10 |
245176 (94.3%) 871.2Mb |
| >Q12 |
182463 (70.2%) 647.1Mb |
| >Q15 |
43586 (16.8%) 128.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.0 (155) |
| 2 |
26.4 (38) |
| 3 |
26.3 (230) |
| 4 |
25.6 (120) |
| 5 |
24.9 (165) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
87025 (13.3) |
| 2 |
84067 (10.7) |
| 3 |
79413 (12.4) |
| 4 |
79178 (12.7) |
| 5 |
72540 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot