NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,785.9 |
| Mean read quality |
12.1 |
| Median read length |
3,113.5 |
| Median read quality |
13.1 |
| Number of reads |
56,068.0 |
| Read length N50 |
8,393.0 |
| STDEV read length |
5,149.9 |
| Total bases |
268,337,736.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56063 (100.0%) 268.3Mb |
| >Q7 |
56032 (99.9%) 268.3Mb |
| >Q10 |
52491 (93.6%) 252.0Mb |
| >Q12 |
38495 (68.7%) 184.8Mb |
| >Q15 |
8045 (14.3%) 31.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.8 (13) |
| 2 |
27.5 (83) |
| 3 |
26.4 (93) |
| 4 |
24.8 (310) |
| 5 |
24.4 (98) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66220 (14.0) |
| 2 |
58221 (13.9) |
| 3 |
55557 (15.0) |
| 4 |
54630 (10.0) |
| 5 |
51207 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot