NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,630.4 |
| Mean read quality |
12.1 |
| Median read length |
2,993.0 |
| Median read quality |
13.1 |
| Number of reads |
84,209.0 |
| Read length N50 |
8,092.0 |
| STDEV read length |
5,029.2 |
| Total bases |
389,923,206.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
84205 (100.0%) 389.9Mb |
| >Q7 |
84192 (100.0%) 389.9Mb |
| >Q10 |
79509 (94.4%) 367.6Mb |
| >Q12 |
58658 (69.7%) 269.4Mb |
| >Q15 |
12579 (14.9%) 47.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.8 (164) |
| 2 |
22.8 (106) |
| 3 |
22.3 (130) |
| 4 |
22.0 (191) |
| 5 |
21.6 (103) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70641 (11.1) |
| 2 |
69365 (12.0) |
| 3 |
65859 (13.7) |
| 4 |
62642 (13.2) |
| 5 |
60927 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot