NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,508.1 |
| Mean read quality |
12.2 |
| Median read length |
3,581.0 |
| Median read quality |
13.2 |
| Number of reads |
45,854.0 |
| Read length N50 |
9,619.0 |
| STDEV read length |
5,951.3 |
| Total bases |
252,568,344.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45852 (100.0%) 252.6Mb |
| >Q7 |
45817 (99.9%) 252.6Mb |
| >Q10 |
43294 (94.4%) 238.6Mb |
| >Q12 |
32434 (70.7%) 178.7Mb |
| >Q15 |
6746 (14.7%) 31.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.9 (10) |
| 2 |
24.0 (103) |
| 3 |
22.5 (243) |
| 4 |
22.4 (197) |
| 5 |
22.4 (218) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81724 (9.9) |
| 2 |
79236 (11.2) |
| 3 |
62012 (9.3) |
| 4 |
59434 (10.7) |
| 5 |
59158 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot