NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,861.6 |
| Mean read quality |
12.0 |
| Median read length |
1,956.0 |
| Median read quality |
12.9 |
| Number of reads |
286,669.0 |
| Read length N50 |
4,829.0 |
| STDEV read length |
2,812.1 |
| Total bases |
820,320,921.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
286668 (100.0%) 820.3Mb |
| >Q7 |
286647 (100.0%) 820.3Mb |
| >Q10 |
268448 (93.6%) 768.4Mb |
| >Q12 |
191636 (66.8%) 547.6Mb |
| >Q15 |
37786 (13.2%) 84.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.1 (57) |
| 2 |
27.1 (60) |
| 3 |
26.2 (42) |
| 4 |
25.3 (164) |
| 5 |
24.6 (125) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41396 (9.7) |
| 2 |
40932 (12.6) |
| 3 |
34829 (14.3) |
| 4 |
32706 (14.5) |
| 5 |
31005 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot