NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,414.7 |
| Mean read quality |
12.0 |
| Median read length |
1,578.0 |
| Median read quality |
13.0 |
| Number of reads |
305,252.0 |
| Read length N50 |
4,108.0 |
| STDEV read length |
2,508.5 |
| Total bases |
737,078,584.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
305245 (100.0%) 737.1Mb |
| >Q7 |
305218 (100.0%) 737.1Mb |
| >Q10 |
286953 (94.0%) 692.0Mb |
| >Q12 |
206294 (67.6%) 495.7Mb |
| >Q15 |
42605 (14.0%) 81.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.5 (40) |
| 2 |
28.1 (13) |
| 3 |
27.7 (49) |
| 4 |
27.7 (41) |
| 5 |
27.2 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40529 (13.9) |
| 2 |
40478 (10.7) |
| 3 |
39432 (15.4) |
| 4 |
37775 (9.9) |
| 5 |
36188 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot