NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,682.2 |
| Mean read quality |
12.0 |
| Median read length |
1,807.0 |
| Median read quality |
12.9 |
| Number of reads |
280,775.0 |
| Read length N50 |
4,528.0 |
| STDEV read length |
2,682.8 |
| Total bases |
753,097,980.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
280770 (100.0%) 753.1Mb |
| >Q7 |
280741 (100.0%) 753.1Mb |
| >Q10 |
262538 (93.5%) 703.6Mb |
| >Q12 |
186164 (66.3%) 497.4Mb |
| >Q15 |
36791 (13.1%) 76.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (42) |
| 2 |
28.7 (10) |
| 3 |
28.5 (13) |
| 4 |
26.8 (54) |
| 5 |
26.3 (42) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35077 (11.2) |
| 2 |
33481 (9.4) |
| 3 |
31164 (9.7) |
| 4 |
30368 (11.3) |
| 5 |
29136 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot