NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,991.9 |
| Mean read quality |
12.0 |
| Median read length |
2,253.0 |
| Median read quality |
12.9 |
| Number of reads |
71,310.0 |
| Read length N50 |
7,764.0 |
| STDEV read length |
4,989.1 |
| Total bases |
284,663,147.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71308 (100.0%) 284.7Mb |
| >Q7 |
71283 (100.0%) 284.7Mb |
| >Q10 |
66752 (93.6%) 265.6Mb |
| >Q12 |
47388 (66.5%) 185.8Mb |
| >Q15 |
8621 (12.1%) 23.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.1 (10) |
| 2 |
24.3 (109) |
| 3 |
24.2 (88) |
| 4 |
23.6 (99) |
| 5 |
23.3 (77) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71318 (9.7) |
| 2 |
61498 (12.8) |
| 3 |
60772 (10.5) |
| 4 |
59601 (13.2) |
| 5 |
56380 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot