NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,035.8 |
| Mean read quality |
11.9 |
| Median read length |
2,230.0 |
| Median read quality |
12.8 |
| Number of reads |
75,940.0 |
| Read length N50 |
7,978.0 |
| STDEV read length |
5,046.0 |
| Total bases |
306,479,983.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75935 (100.0%) 306.5Mb |
| >Q7 |
75903 (100.0%) 306.5Mb |
| >Q10 |
70806 (93.2%) 285.5Mb |
| >Q12 |
49796 (65.6%) 199.1Mb |
| >Q15 |
9118 (12.0%) 26.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.0 (13) |
| 2 |
26.0 (56) |
| 3 |
24.2 (274) |
| 4 |
22.8 (11) |
| 5 |
22.1 (80) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54730 (13.4) |
| 2 |
54723 (13.1) |
| 3 |
54607 (11.6) |
| 4 |
53488 (11.5) |
| 5 |
53122 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot