NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
4,213.2 |
| Mean read quality |
11.9 |
| Median read length |
2,372.0 |
| Median read quality |
12.9 |
| Number of reads |
91,536.0 |
| Read length N50 |
8,215.0 |
| STDEV read length |
5,187.2 |
| Total bases |
385,660,532.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
91535 (100.0%) 385.7Mb |
| >Q7 |
91524 (100.0%) 385.7Mb |
| >Q10 |
85585 (93.5%) 359.8Mb |
| >Q12 |
60491 (66.1%) 250.7Mb |
| >Q15 |
11122 (12.2%) 32.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.1 (10) |
| 2 |
28.9 (10) |
| 3 |
26.2 (122) |
| 4 |
26.0 (10) |
| 5 |
23.4 (160) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79503 (11.7) |
| 2 |
69673 (13.1) |
| 3 |
68258 (12.6) |
| 4 |
62662 (10.2) |
| 5 |
62065 (10.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
4,213.3 |
| Mean read quality |
11.9 |
| Median read length |
2,372.0 |
| Median read quality |
12.9 |
| Number of reads |
91,535.0 |
| Read length N50 |
8,215.0 |
| STDEV read length |
5,187.2 |
| Total bases |
385,660,522.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
91534 (100.0%) 385.7Mb |
| >Q7 |
91523 (100.0%) 385.7Mb |
| >Q10 |
85584 (93.5%) 359.8Mb |
| >Q12 |
60490 (66.1%) 250.7Mb |
| >Q15 |
11121 (12.1%) 32.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.9 (10) |
| 2 |
26.2 (122) |
| 3 |
26.0 (10) |
| 4 |
23.4 (160) |
| 5 |
23.3 (32) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79503 (11.7) |
| 2 |
69673 (13.1) |
| 3 |
68258 (12.6) |
| 4 |
62662 (10.2) |
| 5 |
62065 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot