NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,894.1 |
| Mean read quality |
12.7 |
| Median read length |
1,695.0 |
| Median read quality |
13.8 |
| Number of reads |
436,531.0 |
| Read length N50 |
5,321.0 |
| STDEV read length |
3,575.1 |
| Total bases |
1,263,348,675.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
436525 (100.0%) 1263.3Mb |
| >Q7 |
436485 (100.0%) 1263.3Mb |
| >Q10 |
417282 (95.6%) 1206.7Mb |
| >Q12 |
334604 (76.7%) 969.2Mb |
| >Q15 |
127895 (29.3%) 344.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.1 (106) |
| 2 |
27.7 (57) |
| 3 |
27.3 (68) |
| 4 |
27.2 (42) |
| 5 |
27.0 (108) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69002 (15.0) |
| 2 |
67202 (15.9) |
| 3 |
66816 (13.6) |
| 4 |
65335 (13.2) |
| 5 |
63678 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot