NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,649.8 |
| Mean read quality |
12.7 |
| Median read length |
2,161.0 |
| Median read quality |
13.8 |
| Number of reads |
374,242.0 |
| Read length N50 |
6,703.0 |
| STDEV read length |
4,563.8 |
| Total bases |
1,365,901,605.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
374230 (100.0%) 1365.9Mb |
| >Q7 |
374120 (100.0%) 1365.9Mb |
| >Q10 |
357027 (95.4%) 1304.8Mb |
| >Q12 |
286839 (76.6%) 1054.7Mb |
| >Q15 |
109263 (29.2%) 377.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (45) |
| 2 |
28.3 (33) |
| 3 |
27.4 (10) |
| 4 |
27.1 (10) |
| 5 |
27.1 (56) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
166291 (13.8) |
| 2 |
130265 (11.6) |
| 3 |
111481 (14.4) |
| 4 |
100591 (13.0) |
| 5 |
99828 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot