NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,848.1 |
| Mean read quality |
12.7 |
| Median read length |
2,308.0 |
| Median read quality |
13.9 |
| Number of reads |
405,626.0 |
| Read length N50 |
7,004.0 |
| STDEV read length |
4,664.3 |
| Total bases |
1,560,895,990.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
405623 (100.0%) 1560.9Mb |
| >Q7 |
405590 (100.0%) 1560.9Mb |
| >Q10 |
388123 (95.7%) 1493.1Mb |
| >Q12 |
314043 (77.4%) 1213.2Mb |
| >Q15 |
122087 (30.1%) 443.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.1 (10) |
| 2 |
27.6 (79) |
| 3 |
27.0 (16) |
| 4 |
27.0 (99) |
| 5 |
26.8 (107) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
97024 (12.7) |
| 2 |
90622 (11.5) |
| 3 |
85663 (15.2) |
| 4 |
82804 (17.7) |
| 5 |
79541 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot