NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,019.1 |
| Mean read quality |
12.6 |
| Median read length |
2,664.0 |
| Median read quality |
13.7 |
| Number of reads |
182,027.0 |
| Read length N50 |
6,920.0 |
| STDEV read length |
4,270.6 |
| Total bases |
731,587,160.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
182021 (100.0%) 731.6Mb |
| >Q7 |
181935 (99.9%) 731.6Mb |
| >Q10 |
173052 (95.1%) 696.7Mb |
| >Q12 |
137107 (75.3%) 554.2Mb |
| >Q15 |
49677 (27.3%) 185.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.6 (15) |
| 2 |
28.8 (13) |
| 3 |
28.2 (32) |
| 4 |
27.9 (10) |
| 5 |
27.6 (176) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69448 (15.5) |
| 2 |
56008 (10.0) |
| 3 |
53188 (13.0) |
| 4 |
53088 (14.7) |
| 5 |
52780 (15.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot