NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,967.3 |
| Mean read quality |
12.7 |
| Median read length |
2,486.0 |
| Median read quality |
13.8 |
| Number of reads |
70,125.0 |
| Read length N50 |
7,204.0 |
| STDEV read length |
4,533.9 |
| Total bases |
278,206,523.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
70120 (100.0%) 278.2Mb |
| >Q7 |
70087 (99.9%) 278.2Mb |
| >Q10 |
67115 (95.7%) 266.3Mb |
| >Q12 |
53915 (76.9%) 213.8Mb |
| >Q15 |
20002 (28.5%) 72.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.2 (13) |
| 2 |
26.9 (175) |
| 3 |
26.8 (83) |
| 4 |
26.3 (64) |
| 5 |
25.9 (126) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
88093 (13.2) |
| 2 |
60467 (15.2) |
| 3 |
51981 (12.5) |
| 4 |
51814 (15.4) |
| 5 |
51624 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot