NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,965.7 |
| Mean read quality |
12.6 |
| Median read length |
2,531.0 |
| Median read quality |
13.7 |
| Number of reads |
137,229.0 |
| Read length N50 |
7,105.0 |
| STDEV read length |
4,405.0 |
| Total bases |
544,211,048.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
137223 (100.0%) 544.2Mb |
| >Q7 |
137124 (99.9%) 544.2Mb |
| >Q10 |
130749 (95.3%) 520.9Mb |
| >Q12 |
104564 (76.2%) 417.5Mb |
| >Q15 |
38154 (27.8%) 139.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.3 (10) |
| 2 |
29.7 (10) |
| 3 |
27.6 (10) |
| 4 |
26.9 (10) |
| 5 |
26.8 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65220 (11.6) |
| 2 |
62649 (17.0) |
| 3 |
61658 (15.1) |
| 4 |
57332 (11.9) |
| 5 |
56920 (13.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,965.7 |
| Mean read quality |
12.6 |
| Median read length |
2,531.5 |
| Median read quality |
13.7 |
| Number of reads |
137,228.0 |
| Read length N50 |
7,105.0 |
| STDEV read length |
4,405.0 |
| Total bases |
544,211,038.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
137222 (100.0%) 544.2Mb |
| >Q7 |
137123 (99.9%) 544.2Mb |
| >Q10 |
130748 (95.3%) 520.9Mb |
| >Q12 |
104563 (76.2%) 417.5Mb |
| >Q15 |
38153 (27.8%) 139.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.7 (10) |
| 2 |
27.6 (10) |
| 3 |
26.9 (10) |
| 4 |
26.8 (10) |
| 5 |
26.6 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65220 (11.6) |
| 2 |
62649 (17.0) |
| 3 |
61658 (15.1) |
| 4 |
57332 (11.9) |
| 5 |
56920 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot