NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,882.5 |
| Mean read quality |
12.6 |
| Median read length |
2,124.0 |
| Median read quality |
13.8 |
| Number of reads |
479,521.0 |
| Read length N50 |
4,475.0 |
| STDEV read length |
2,579.7 |
| Total bases |
1,382,211,880.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
479517 (100.0%) 1382.2Mb |
| >Q7 |
479495 (100.0%) 1382.2Mb |
| >Q10 |
456025 (95.1%) 1316.1Mb |
| >Q12 |
364200 (76.0%) 1059.8Mb |
| >Q15 |
138309 (28.8%) 384.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.1 (53) |
| 2 |
28.5 (51) |
| 3 |
28.3 (50) |
| 4 |
28.1 (52) |
| 5 |
27.8 (55) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39223 (9.5) |
| 2 |
38458 (12.2) |
| 3 |
36683 (15.3) |
| 4 |
34385 (13.7) |
| 5 |
33304 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot