NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,722.1 |
| Mean read quality |
12.7 |
| Median read length |
1,940.0 |
| Median read quality |
13.9 |
| Number of reads |
332,626.0 |
| Read length N50 |
4,327.0 |
| STDEV read length |
2,538.4 |
| Total bases |
905,433,491.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
332623 (100.0%) 905.4Mb |
| >Q7 |
332611 (100.0%) 905.4Mb |
| >Q10 |
318915 (95.9%) 868.4Mb |
| >Q12 |
257546 (77.4%) 708.7Mb |
| >Q15 |
98901 (29.7%) 260.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.8 (126) |
| 2 |
26.2 (10) |
| 3 |
24.6 (289) |
| 4 |
24.6 (95) |
| 5 |
24.5 (123) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
32825 (13.6) |
| 2 |
30917 (12.6) |
| 3 |
28816 (14.5) |
| 4 |
28341 (14.7) |
| 5 |
27999 (14.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot