NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,132.1 |
| Mean read quality |
12.7 |
| Median read length |
2,338.0 |
| Median read quality |
13.9 |
| Number of reads |
277,660.0 |
| Read length N50 |
4,829.0 |
| STDEV read length |
2,773.2 |
| Total bases |
869,645,612.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
277660 (100.0%) 869.6Mb |
| >Q7 |
277642 (100.0%) 869.6Mb |
| >Q10 |
265685 (95.7%) 832.4Mb |
| >Q12 |
215207 (77.5%) 679.5Mb |
| >Q15 |
82351 (29.7%) 249.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.7 (107) |
| 2 |
26.6 (57) |
| 3 |
25.7 (271) |
| 4 |
25.6 (197) |
| 5 |
24.9 (291) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35569 (10.7) |
| 2 |
35056 (13.1) |
| 3 |
32997 (15.1) |
| 4 |
31682 (15.9) |
| 5 |
31049 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot