NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,446.8 |
| Mean read quality |
12.7 |
| Median read length |
2,190.0 |
| Median read quality |
13.8 |
| Number of reads |
111,615.0 |
| Read length N50 |
5,851.0 |
| STDEV read length |
3,876.4 |
| Total bases |
384,714,516.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
111612 (100.0%) 384.7Mb |
| >Q7 |
111607 (100.0%) 384.7Mb |
| >Q10 |
106593 (95.5%) 366.9Mb |
| >Q12 |
85840 (76.9%) 297.4Mb |
| >Q15 |
32573 (29.2%) 104.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.5 (135) |
| 2 |
26.3 (53) |
| 3 |
25.7 (55) |
| 4 |
24.6 (208) |
| 5 |
23.7 (85) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57438 (15.7) |
| 2 |
57154 (13.7) |
| 3 |
57024 (15.0) |
| 4 |
55609 (11.5) |
| 5 |
50806 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot