NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,167.1 |
| Mean read quality |
12.7 |
| Median read length |
2,764.0 |
| Median read quality |
13.9 |
| Number of reads |
74,636.0 |
| Read length N50 |
6,950.0 |
| STDEV read length |
4,441.1 |
| Total bases |
311,014,969.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
74629 (100.0%) 311.0Mb |
| >Q7 |
74613 (100.0%) 311.0Mb |
| >Q10 |
71286 (95.5%) 297.9Mb |
| >Q12 |
57491 (77.0%) 241.1Mb |
| >Q15 |
21714 (29.1%) 85.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (10) |
| 2 |
28.2 (10) |
| 3 |
28.0 (33) |
| 4 |
26.4 (121) |
| 5 |
25.4 (184) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71623 (11.6) |
| 2 |
56994 (13.2) |
| 3 |
53740 (14.0) |
| 4 |
53585 (12.8) |
| 5 |
53034 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot