NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,604.3 |
| Mean read quality |
12.7 |
| Median read length |
2,389.0 |
| Median read quality |
13.8 |
| Number of reads |
114,229.0 |
| Read length N50 |
5,991.0 |
| STDEV read length |
3,806.0 |
| Total bases |
411,718,858.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
114228 (100.0%) 411.7Mb |
| >Q7 |
114216 (100.0%) 411.7Mb |
| >Q10 |
109097 (95.5%) 393.6Mb |
| >Q12 |
87689 (76.8%) 318.0Mb |
| >Q15 |
32869 (28.8%) 111.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.8 (125) |
| 2 |
24.7 (133) |
| 3 |
24.2 (207) |
| 4 |
23.6 (237) |
| 5 |
23.3 (538) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46632 (15.8) |
| 2 |
45597 (10.0) |
| 3 |
42663 (11.3) |
| 4 |
42310 (13.0) |
| 5 |
42143 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot