NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,159.0 |
| Mean read quality |
12.7 |
| Median read length |
1,925.0 |
| Median read quality |
13.8 |
| Number of reads |
146,756.0 |
| Read length N50 |
5,555.0 |
| STDEV read length |
3,974.6 |
| Total bases |
463,608,471.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
146748 (100.0%) 463.6Mb |
| >Q7 |
146686 (100.0%) 463.6Mb |
| >Q10 |
140383 (95.7%) 443.6Mb |
| >Q12 |
113437 (77.3%) 360.3Mb |
| >Q15 |
42318 (28.8%) 125.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (10) |
| 2 |
27.9 (10) |
| 3 |
27.8 (10) |
| 4 |
27.7 (10) |
| 5 |
27.5 (42) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
107240 (16.0) |
| 2 |
99316 (13.1) |
| 3 |
91824 (12.8) |
| 4 |
90426 (9.5) |
| 5 |
90349 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot