NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,985.8 |
| Mean read quality |
12.7 |
| Median read length |
2,408.0 |
| Median read quality |
13.8 |
| Number of reads |
303,499.0 |
| Read length N50 |
7,119.0 |
| STDEV read length |
4,891.4 |
| Total bases |
1,209,689,060.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
303490 (100.0%) 1209.7Mb |
| >Q7 |
303423 (100.0%) 1209.7Mb |
| >Q10 |
290158 (95.6%) 1157.1Mb |
| >Q12 |
233860 (77.1%) 934.1Mb |
| >Q15 |
87148 (28.7%) 323.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.4 (13) |
| 2 |
29.3 (50) |
| 3 |
28.4 (13) |
| 4 |
28.3 (43) |
| 5 |
28.1 (88) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
120246 (11.8) |
| 2 |
100391 (14.2) |
| 3 |
93814 (13.4) |
| 4 |
92647 (14.7) |
| 5 |
87797 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot