NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,845.8 |
| Mean read quality |
12.7 |
| Median read length |
2,234.0 |
| Median read quality |
13.9 |
| Number of reads |
233,996.0 |
| Read length N50 |
7,037.0 |
| STDEV read length |
4,995.3 |
| Total bases |
899,900,396.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
233986 (100.0%) 899.9Mb |
| >Q7 |
233892 (100.0%) 899.9Mb |
| >Q10 |
223803 (95.6%) 861.1Mb |
| >Q12 |
181346 (77.5%) 700.4Mb |
| >Q15 |
68952 (29.5%) 247.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.2 (10) |
| 2 |
29.6 (10) |
| 3 |
29.3 (10) |
| 4 |
28.5 (10) |
| 5 |
28.4 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
98675 (14.2) |
| 2 |
97915 (13.3) |
| 3 |
87255 (12.2) |
| 4 |
87040 (14.8) |
| 5 |
83657 (15.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,845.8 |
| Mean read quality |
12.7 |
| Median read length |
2,234.0 |
| Median read quality |
13.9 |
| Number of reads |
233,995.0 |
| Read length N50 |
7,037.0 |
| STDEV read length |
4,995.3 |
| Total bases |
899,900,386.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
233985 (100.0%) 899.9Mb |
| >Q7 |
233891 (100.0%) 899.9Mb |
| >Q10 |
223802 (95.6%) 861.1Mb |
| >Q12 |
181345 (77.5%) 700.4Mb |
| >Q15 |
68951 (29.5%) 247.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.6 (10) |
| 2 |
29.3 (10) |
| 3 |
28.5 (10) |
| 4 |
28.4 (10) |
| 5 |
28.4 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
98675 (14.2) |
| 2 |
97915 (13.3) |
| 3 |
87255 (12.2) |
| 4 |
87040 (14.8) |
| 5 |
83657 (15.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot