NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,649.7 |
| Mean read quality |
12.6 |
| Median read length |
3,204.0 |
| Median read quality |
13.8 |
| Number of reads |
117,845.0 |
| Read length N50 |
7,681.0 |
| STDEV read length |
4,695.5 |
| Total bases |
547,947,990.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
117841 (100.0%) 547.9Mb |
| >Q7 |
117823 (100.0%) 547.9Mb |
| >Q10 |
112597 (95.5%) 524.0Mb |
| >Q12 |
90318 (76.6%) 421.6Mb |
| >Q15 |
32548 (27.6%) 141.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.8 (32) |
| 2 |
24.6 (122) |
| 3 |
24.4 (81) |
| 4 |
23.9 (144) |
| 5 |
23.8 (433) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62206 (11.9) |
| 2 |
59869 (11.5) |
| 3 |
59267 (14.4) |
| 4 |
56389 (14.1) |
| 5 |
54422 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot