NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,914.7 |
| Mean read quality |
12.7 |
| Median read length |
2,526.5 |
| Median read quality |
13.9 |
| Number of reads |
173,620.0 |
| Read length N50 |
6,657.0 |
| STDEV read length |
4,320.5 |
| Total bases |
679,674,657.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
173614 (100.0%) 679.7Mb |
| >Q7 |
173571 (100.0%) 679.7Mb |
| >Q10 |
166410 (95.8%) 652.0Mb |
| >Q12 |
134825 (77.7%) 530.4Mb |
| >Q15 |
49697 (28.6%) 184.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (10) |
| 2 |
29.0 (59) |
| 3 |
28.0 (58) |
| 4 |
27.4 (55) |
| 5 |
27.3 (62) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67324 (14.0) |
| 2 |
60313 (10.8) |
| 3 |
59990 (11.8) |
| 4 |
59989 (12.1) |
| 5 |
57897 (15.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot