NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,382.9 |
| Mean read quality |
12.6 |
| Median read length |
3,537.5 |
| Median read quality |
13.8 |
| Number of reads |
125,782.0 |
| Read length N50 |
9,246.0 |
| STDEV read length |
5,749.4 |
| Total bases |
677,075,027.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
125775 (100.0%) 677.1Mb |
| >Q7 |
125720 (100.0%) 677.1Mb |
| >Q10 |
120055 (95.4%) 648.1Mb |
| >Q12 |
96955 (77.1%) 526.0Mb |
| >Q15 |
34727 (27.6%) 177.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.3 (10) |
| 2 |
28.0 (10) |
| 3 |
27.8 (10) |
| 4 |
27.6 (10) |
| 5 |
27.2 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69105 (14.6) |
| 2 |
65979 (15.1) |
| 3 |
61179 (10.6) |
| 4 |
61056 (12.0) |
| 5 |
60566 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot