NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
366.3 |
| Mean read quality |
10.7 |
| Median read length |
153.0 |
| Median read quality |
11.5 |
| Number of reads |
23,801.0 |
| Read length N50 |
899.0 |
| STDEV read length |
763.2 |
| Total bases |
8,719,051.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
23795 (100.0%) 8.7Mb |
| >Q7 |
23706 (99.6%) 8.7Mb |
| >Q10 |
17279 (72.6%) 6.8Mb |
| >Q12 |
10275 (43.2%) 4.3Mb |
| >Q15 |
3110 (13.1%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.5 (54) |
| 2 |
27.5 (50) |
| 3 |
27.3 (54) |
| 4 |
24.9 (252) |
| 5 |
24.7 (228) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18343 (11.9) |
| 2 |
16033 (10.5) |
| 3 |
15302 (10.3) |
| 4 |
15017 (13.2) |
| 5 |
14906 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot