NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
353.5 |
| Mean read quality |
10.6 |
| Median read length |
162.0 |
| Median read quality |
11.3 |
| Number of reads |
8,434.0 |
| Read length N50 |
716.0 |
| STDEV read length |
761.9 |
| Total bases |
2,981,646.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8434 (100.0%) 3.0Mb |
| >Q7 |
8423 (99.9%) 3.0Mb |
| >Q10 |
6251 (74.1%) 2.2Mb |
| >Q12 |
3093 (36.7%) 1.0Mb |
| >Q15 |
540 (6.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.7 (102) |
| 2 |
24.1 (134) |
| 3 |
23.0 (103) |
| 4 |
22.8 (68) |
| 5 |
22.3 (78) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15577 (11.7) |
| 2 |
13791 (12.0) |
| 3 |
12311 (11.8) |
| 4 |
12105 (9.8) |
| 5 |
10707 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot