NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
498.5 |
| Mean read quality |
10.6 |
| Median read length |
181.5 |
| Median read quality |
11.3 |
| Number of reads |
6,828.0 |
| Read length N50 |
1,405.0 |
| STDEV read length |
1,008.5 |
| Total bases |
3,403,666.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6828 (100.0%) 3.4Mb |
| >Q7 |
6823 (99.9%) 3.4Mb |
| >Q10 |
5096 (74.6%) 2.6Mb |
| >Q12 |
2544 (37.3%) 1.2Mb |
| >Q15 |
421 (6.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.1 (46) |
| 2 |
21.9 (32) |
| 3 |
21.0 (34) |
| 4 |
21.0 (81) |
| 5 |
20.9 (74) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18378 (10.2) |
| 2 |
15920 (12.5) |
| 3 |
14871 (11.3) |
| 4 |
13450 (12.7) |
| 5 |
13089 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot