NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,914.4 |
| Mean read quality |
9.7 |
| Median read length |
1,119.5 |
| Median read quality |
10.3 |
| Number of reads |
82,764.0 |
| Read length N50 |
3,447.0 |
| STDEV read length |
2,265.9 |
| Total bases |
158,441,411.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
82764 (100.0%) 158.4Mb |
| >Q7 |
82764 (100.0%) 158.4Mb |
| >Q10 |
48493 (58.6%) 79.3Mb |
| >Q12 |
8679 (10.5%) 9.8Mb |
| >Q15 |
88 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (155) |
| 2 |
18.2 (187) |
| 3 |
17.7 (164) |
| 4 |
17.3 (210) |
| 5 |
16.9 (163) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42705 (8.2) |
| 2 |
36173 (8.6) |
| 3 |
35347 (9.7) |
| 4 |
34391 (8.0) |
| 5 |
32286 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot