NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,335.2 |
| Mean read quality |
9.7 |
| Median read length |
857.0 |
| Median read quality |
10.2 |
| Number of reads |
84,224.0 |
| Read length N50 |
2,190.0 |
| STDEV read length |
1,420.6 |
| Total bases |
112,453,362.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
84224 (100.0%) 112.5Mb |
| >Q7 |
84224 (100.0%) 112.5Mb |
| >Q10 |
48460 (57.5%) 56.4Mb |
| >Q12 |
9341 (11.1%) 7.6Mb |
| >Q15 |
172 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (187) |
| 2 |
18.0 (176) |
| 3 |
17.9 (152) |
| 4 |
17.9 (193) |
| 5 |
17.5 (160) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28433 (8.8) |
| 2 |
23033 (9.2) |
| 3 |
20398 (9.3) |
| 4 |
20334 (8.9) |
| 5 |
19334 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot