NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,797.2 |
| Mean read quality |
9.6 |
| Median read length |
1,008.0 |
| Median read quality |
10.2 |
| Number of reads |
175,676.0 |
| Read length N50 |
3,331.0 |
| STDEV read length |
2,249.5 |
| Total bases |
315,733,260.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
175676 (100.0%) 315.7Mb |
| >Q7 |
175676 (100.0%) 315.7Mb |
| >Q10 |
96740 (55.1%) 141.7Mb |
| >Q12 |
17842 (10.2%) 16.6Mb |
| >Q15 |
317 (0.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (160) |
| 2 |
18.2 (174) |
| 3 |
17.6 (205) |
| 4 |
17.5 (169) |
| 5 |
17.4 (177) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48920 (10.0) |
| 2 |
48264 (10.7) |
| 3 |
47770 (8.2) |
| 4 |
44333 (10.3) |
| 5 |
42478 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot