NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,186.8 |
| Mean read quality |
9.7 |
| Median read length |
1,288.5 |
| Median read quality |
10.3 |
| Number of reads |
103,400.0 |
| Read length N50 |
3,962.0 |
| STDEV read length |
2,607.3 |
| Total bases |
226,115,780.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
103400 (100.0%) 226.1Mb |
| >Q7 |
103400 (100.0%) 226.1Mb |
| >Q10 |
60725 (58.7%) 111.2Mb |
| >Q12 |
12307 (11.9%) 15.6Mb |
| >Q15 |
175 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (168) |
| 2 |
18.2 (153) |
| 3 |
18.0 (153) |
| 4 |
17.6 (201) |
| 5 |
17.3 (157) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58004 (8.4) |
| 2 |
55860 (8.2) |
| 3 |
45135 (8.4) |
| 4 |
41327 (8.4) |
| 5 |
39469 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot