NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
452.4 |
| Mean read quality |
11.0 |
| Median read length |
303.0 |
| Median read quality |
11.3 |
| Number of reads |
73.0 |
| Read length N50 |
370.0 |
| STDEV read length |
619.8 |
| Total bases |
33,025.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
73 (100.0%) 0.0Mb |
| >Q7 |
73 (100.0%) 0.0Mb |
| >Q10 |
73 (100.0%) 0.0Mb |
| >Q12 |
29 (39.7%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (1147) |
| 2 |
14.6 (274) |
| 3 |
14.6 (392) |
| 4 |
14.5 (403) |
| 5 |
14.1 (262) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5145 (12.5) |
| 2 |
2144 (12.8) |
| 3 |
1278 (12.5) |
| 4 |
1147 (14.7) |
| 5 |
1058 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot