NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
540.8 |
| Mean read quality |
12.5 |
| Median read length |
309.0 |
| Median read quality |
13.4 |
| Number of reads |
235.0 |
| Read length N50 |
588.0 |
| STDEV read length |
774.3 |
| Total bases |
127,085.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
235 (100.0%) 0.1Mb |
| >Q7 |
235 (100.0%) 0.1Mb |
| >Q10 |
235 (100.0%) 0.1Mb |
| >Q12 |
167 (71.1%) 0.1Mb |
| >Q15 |
41 (17.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (6418) |
| 2 |
20.3 (2010) |
| 3 |
20.1 (5188) |
| 4 |
18.9 (1962) |
| 5 |
18.8 (3383) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6418 (20.5) |
| 2 |
5679 (13.5) |
| 3 |
5188 (20.1) |
| 4 |
3393 (14.8) |
| 5 |
3383 (18.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot