NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,740.7 |
| Mean read quality |
12.5 |
| Median read length |
2,730.0 |
| Median read quality |
13.3 |
| Number of reads |
161.0 |
| Read length N50 |
3,009.0 |
| STDEV read length |
890.1 |
| Total bases |
441,259.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
161 (100.0%) 0.4Mb |
| >Q7 |
161 (100.0%) 0.4Mb |
| >Q10 |
161 (100.0%) 0.4Mb |
| >Q12 |
129 (80.1%) 0.4Mb |
| >Q15 |
22 (13.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (3284) |
| 2 |
17.0 (3473) |
| 3 |
16.6 (2727) |
| 4 |
16.5 (2368) |
| 5 |
16.3 (2845) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4936 (11.4) |
| 2 |
4913 (13.7) |
| 3 |
4731 (13.4) |
| 4 |
4501 (12.3) |
| 5 |
4431 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot