NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,152.6 |
| Mean read quality |
13.2 |
| Median read length |
2,302.5 |
| Median read quality |
14.4 |
| Number of reads |
52.0 |
| Read length N50 |
2,810.0 |
| STDEV read length |
1,284.5 |
| Total bases |
111,935.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52 (100.0%) 0.1Mb |
| >Q7 |
52 (100.0%) 0.1Mb |
| >Q10 |
52 (100.0%) 0.1Mb |
| >Q12 |
44 (84.6%) 0.1Mb |
| >Q15 |
17 (32.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (2722) |
| 2 |
17.7 (3377) |
| 3 |
17.5 (2628) |
| 4 |
17.2 (1849) |
| 5 |
16.9 (3087) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5205 (12.5) |
| 2 |
4875 (15.7) |
| 3 |
4444 (14.0) |
| 4 |
4389 (14.3) |
| 5 |
4246 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot