NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
315.2 |
| Mean read quality |
10.6 |
| Median read length |
291.5 |
| Median read quality |
11.1 |
| Number of reads |
20.0 |
| Read length N50 |
308.0 |
| STDEV read length |
56.1 |
| Total bases |
6,304.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20 (100.0%) 0.0Mb |
| >Q7 |
20 (100.0%) 0.0Mb |
| >Q10 |
19 (95.0%) 0.0Mb |
| >Q12 |
4 (20.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (352) |
| 2 |
12.7 (442) |
| 3 |
12.2 (308) |
| 4 |
12.0 (481) |
| 5 |
12.0 (275) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
481 (12.0) |
| 2 |
442 (12.7) |
| 3 |
352 (12.9) |
| 4 |
345 (9.3) |
| 5 |
343 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot