NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,004.1 |
| Mean read quality |
13.4 |
| Median read length |
2,008.0 |
| Median read quality |
14.3 |
| Number of reads |
57.0 |
| Read length N50 |
2,125.0 |
| STDEV read length |
438.5 |
| Total bases |
114,233.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
57 (100.0%) 0.1Mb |
| >Q7 |
57 (100.0%) 0.1Mb |
| >Q10 |
57 (100.0%) 0.1Mb |
| >Q12 |
51 (89.5%) 0.1Mb |
| >Q15 |
18 (31.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (2217) |
| 2 |
16.8 (1678) |
| 3 |
16.8 (2869) |
| 4 |
16.8 (1629) |
| 5 |
16.8 (2542) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2869 (16.8) |
| 2 |
2751 (13.7) |
| 3 |
2663 (15.2) |
| 4 |
2645 (13.5) |
| 5 |
2644 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot