NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,191.1 |
| Mean read quality |
12.0 |
| Median read length |
825.0 |
| Median read quality |
13.2 |
| Number of reads |
25.0 |
| Read length N50 |
1,938.0 |
| STDEV read length |
958.3 |
| Total bases |
29,777.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25 (100.0%) 0.0Mb |
| >Q7 |
25 (100.0%) 0.0Mb |
| >Q10 |
25 (100.0%) 0.0Mb |
| >Q12 |
16 (64.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (1841) |
| 2 |
14.8 (1785) |
| 3 |
14.8 (633) |
| 4 |
14.7 (825) |
| 5 |
14.6 (2369) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3975 (13.5) |
| 2 |
2549 (13.2) |
| 3 |
2384 (13.4) |
| 4 |
2369 (14.6) |
| 5 |
1966 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot