NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,928.1 |
| Mean read quality |
13.4 |
| Median read length |
1,916.0 |
| Median read quality |
14.5 |
| Number of reads |
85.0 |
| Read length N50 |
1,968.0 |
| STDEV read length |
388.7 |
| Total bases |
163,885.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
85 (100.0%) 0.2Mb |
| >Q7 |
85 (100.0%) 0.2Mb |
| >Q10 |
85 (100.0%) 0.2Mb |
| >Q12 |
77 (90.6%) 0.1Mb |
| >Q15 |
30 (35.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (1828) |
| 2 |
16.5 (1899) |
| 3 |
16.4 (1630) |
| 4 |
16.3 (1138) |
| 5 |
16.1 (1908) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2906 (14.7) |
| 2 |
2825 (15.7) |
| 3 |
2737 (16.1) |
| 4 |
2708 (12.0) |
| 5 |
2690 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot