NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,861.1 |
| Mean read quality |
12.2 |
| Median read length |
1,788.0 |
| Median read quality |
13.2 |
| Number of reads |
204,989.0 |
| Read length N50 |
2,016.0 |
| STDEV read length |
763.7 |
| Total bases |
381,501,090.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
204989 (100.0%) 381.5Mb |
| >Q7 |
204989 (100.0%) 381.5Mb |
| >Q10 |
191855 (93.6%) 356.9Mb |
| >Q12 |
143014 (69.8%) 269.3Mb |
| >Q15 |
34124 (16.6%) 68.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (2128) |
| 2 |
20.3 (1219) |
| 3 |
20.2 (2820) |
| 4 |
20.2 (2605) |
| 5 |
20.2 (741) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22279 (10.3) |
| 2 |
21744 (12.1) |
| 3 |
14882 (9.7) |
| 4 |
13978 (19.5) |
| 5 |
10720 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot